Papers and Presentations
Papers

 

  • Richard Harang; Linda Petzold; Guillaume Bonnet; WAVOS: A MATLAB Toolkit for Wavelet Analysis and Visualization of Oscillatory Systems.  Submitted to BMC Research Notes

  • Sungwon An; Richard Harang; Kirsten Meeker; Daniel Granados-Fuentes; Connie Tsai; Francis J Doyle III; Linda R Petzold; Erik D Herzog; Vasoactive intestinal polypeptide speeds circadian entrainment by reducing intercellular synchrony. Submitted to Neuron

     

  • Kirsten Meeker, Richard Harang, Alexis B. Webb, David K. Welsh, Francis J. Doyle III, Guillaume Bonnet, Erik D. Herzog, and Linda R. Petzold; Wavelet Measurement Suggests Cause of Period Instability in Mammalian Circadian Neurons. Journal of Biological Rhythms.  August, 2011, 26:353-362

  • Period distribution in mammalian circadian neurons; with K. Meeker, G. Bonnet, F. Doyle, and L. Petzold; FOSBE 2009 conference proceedings
 
Presentations

  • Computational Modeling of Biological Clocks: Perspectives and Approaches with K. Meeker, P. Foteinou, F. Doyle, and L. Petzold - Poster presentation at ICB symposium, February 2011

  • Data mining approaches to inference in Boolean networks with T. Yuraszeck, X. Yan, and L. Petzold - Poster presentation at ICB symposium, February 2011; also presented at the UCSD Center for Chronobiology Symposium, February 2011

  • Why you need wavelets - Time-frequency analysis with the Morlet continuous wavelet - Lecture at IGERT Systems Biology Seminar Series, UCSB, November 2010

  • Wavelet Analysis Reveals Period Wandering in SCN Neurons with K. Meeker, A. Webb, E. Herzog, F. Doyle, and L. Petzold - Winner of the "Best Poster'' award at UCSD Center for Chronobiology Symposium, March 2010; also presented at Society for Research on Biological Rhythms at Destin, Florida; May 2010.

  • Period Distribution in Mammalian Circadian Neurons with K. Meeker, A. Webb, E. Herzog, F. Doyle, and L. Petzold - Poster presentation at Fundamentals of Systems Biology in Engineering, Denver CO, August 2009; also presented at Circadian Rhythms Symposium, University of California San Diego and Salk Institute for Biological Sciences, October 2009

  • Wavelet-based analysis of rhythmicity and period shift in gene expression from SCN neurons, with K. Meeker, F. Doyle, and L. Petzold - Poster presentation at Society for Research on Biological Rythms at Destin, Florida; May 2008